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Publications

2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011

2024
Original article
1.  Kamiya H.
Escherichia coli Orf135 (NudG) Mutant Protein Specific for Oxidized dATP.
Nucleosides, Nucleotides Nucleic Acids, in press

2.  Kamiya H.
Split MutT prevents the mutator phenotype of mutT-deficient Escherichia coli.
Genes Environment, 46, 19 (6 pages) (2024)

3.  Hernandez A, Hedlich-Dwyer J, Hussain S, Levi H, Sonavane M, Suzuki T, Kamiya H, Gassman NR.
Acute exposure to dihydroxyacetone promotes genotoxicity and chromosomal instability in lung, cardiac, and liver cell models.
Toxicol. Sci., 201, 85-102 (2024)


4.  Suzuki T, Yoshida S and Kamiya H.
Inhibition of uracil DNA glycosylase alters frequency and spectrum of action-at-a-distance mutations induced by 8-oxo-7,8-dihydroguanine.
Biol. Pharm. Bull., 47, 1275-1281 (2024)

5.  Fujikawa Y, Kawai H, Suzuki T and Kamiya H.
Visualization of oxidized guanine nucleotides accumulation in living cells with split MutT.
Nucleic Acids Res., 52, 6532-6542 (2024)

6.  Kawai H, Sato K, Kato T and Kamiya H.
Correction of substitution, deletion, and insertion mutations by 5'-tailed duplexes.
J. Biosci. Bioeng., 137, 157-164 (2024)


7.  Fukushima R, Suzuki T, Kobayakawa A and Kamiya H.
Action-at-a-distance mutations induced by 8-oxo-7,8-dihydroguanine are dependent on APOBEC3.
Mutagenesis, 39, 24-31 (2024)

2022
Original article
1.    Suzuki T and Kamiya H.
Easily-controllable, helper phage-free single-stranded phagemid production system.
Genes Environment, 44, 25 (8 pages) (2022)

2.  Shinriki S, Hirayama M, Nagamachi A, Yokoyama A, Kawamura T, Kanai A, Kawai H, Iwakiri J, Liu R, Maeshiro M, Tungalag S, Tasaki M, Ueda M, Tomizawa K, Kataoka N, Ideue T, Suzuki Y, Asai K, Tani T, Inaba T and Matsui H.
DDX41 coordinates RNA splicing and transcriptional elongation to prevent DNA replication stress in hematopoietic cells.
Leukemia, 36, 2605-2620 (2022)


3.  Kawai H, Iwata R, Ebi S, Sugihara R, Masuda S, Fujiwara C, Kimura S and Kamiya H.
Development of a versatile high-throughput mutagenesis assay with multiplexed short read NGS using DNA-barcoded supF shuttle vector library amplified in E. coli.
eLife, 11, e83780 (2022)


4.  Fukushima R, Suzuki T, Komatsu Y and Kamiya H.
Biased distribution of action-at-a-distance mutations by 8-oxo-7,8-dihydroguanine.
Mutat. Res./Fund. Mol. Mech., 825, 111794 (2022)


5.    Kawai H, Kamitsubo R and Kamiya H.
Correction of monomeric enhanced green fluorescent protein (mEGFP) gene by short 5'-tailed duplexes.
J. Biosci. Bioeng., 134, 175-181 (2022)

6.  Kanao R, Kawai H, Taniguchi T, Takata M and Masutani C.
RFWD3 and translesion DNA polymerases contribute to PCNA modification-dependent DNA damage tolerance.
Life Sci. Alliance, 5, e202201584 (2022)


7.  Suzuki T, Zaima Y, Fujikawa Y, Fukushima R and Kamiya H.
Paradoxical role of the major DNA repair protein, OGG1, in action-at-a-distance mutation induction by 8-oxo-7,8-dihydroguanine.
DNA Repair, 111, 103276 (2022)


2021
Original article
1.    Kawai H, Yazama K, Yanai Y, Kamitsubo R and Kamiya H.
Gene correction by 5'-tailed duplexes with short editor oligodeoxyribonucleotides.
J. Biosci. Bioeng., 132, 552-559 (2021)

2.  Suzuki T, Masuda H, Mori M, Ito R and Kamiya H.
Action-at-a-distance mutations at 5'-GpA-3' sites induced by oxidized guanine in WRN-knockdown cells.
Mutagenesis, 36, 349-357 (2021)


3.    Suzuki T, Katayama Y, Komatsu Y and Kamiya H.
Similar frequency and signature of untargeted substitutions induced by abasic site analog under reduced human APE1 conditions.
J. Toxicol Sci., 46, 283-288 (2021)

4.    Suzuki T, Sassa A, Grúz P, Gupta RC, Johnson F, Adachi N and Nohmi T.
Error-prone bypass patch by a low-fidelity variant of DNA polymerase ζ in human cells.
DNA Repair, 100, 103052 (2021)


2020
Original article
1.    Takeishi A, Kogashi H, Odagiri M, Sasanuma H, Takeda S, Yasui M, Honma M, Suzuki T, Kamiya H, Sugasawa K, Ura K and Sassa A.
Tyrosyl-DNA phosphodiesterases are involved in mutagenic events at a ribonucleotide embedded into DNA in human cells.
PLoS ONE, 15, e0244790 (2020)


2.    Fukushima R, Suzuki T and Kamiya H.
New indicator Escherichia coli strain for rapid and accurate detection of supF mutations.
Genes Environment, 42, 28 (9 pages) (2020)


3.    Kawai H, Sato K, Shirahama W, Suzuki T and Kamiya H.
Single-stranded DNA versus tailed duplex in sequence convesion of lacZα DNA.
Nucleosides, Nucleotides Nucleic Acids, 39, 1245-1250 (2020)


4.    Suzuki T, Wakao Y, Goda T and Kamiya H.
Conventional plasmid DNAs with a CpG-containing backbone achieve durable transgene expression in mouse liver.
J. Gene Med., 22, e3138 (6 pages) (2020)


5.    Suzuki T, Miura N, Hojo R, Yanagiba Y, Suda M, Hasegawa T, Miyagawa M and Wang RS.
Genotoxicity assessment of titanium dioxide nanoparticle accumulation of 90 days in the liver of gpt delta transgenic mice.
Genes Environment, 42, 7 (6 pages) (2020)


Etc.
1.    Kamiya H.
High-throughput analysis of DNA repair in microplates towards identification of inhibitors.

Genes Environment, 42, 11 (3 pages) (2020)


2019
Original article

1.    Suzuki T, Katayama Y, Komatsu Y and Kamiya H.
Large deletions and untargeted substitutions induced by abasic site analog on leading versus lagging strand templates in human cells.
Mutagenesis, 34, 421-429 (2019)


2.    Suzuki T, Wakao Y, Watanabe T, Hori M, Ikeda Y, Tsuchiya H, Kogure K, Harada-Shiba M, Fujimuro M and Kamiya H.
No enhancing effects of plasmid-specific histone acetyltransferase recruitment system on transgene expression in vivo.
Nucleosides, Nucleotides Nucleic Acids, 38, 942-949 (2019)

3.    Ueda M, Matsuura K, Kawai H, Wakasugi M and Matsunaga T.

Spironolactone-induced XPB degradation depends on CDK7 kinase and SCFFBXL18 E3 ligase.
Genes Cells, 24, 284-296 (2019)

4.    Masuda Y, Kanao R, Kawai H, Kukimoto I and Masutani C.

Preferential digestion of PCNA-ubiquitin and p53-ubiquitin linkages by USP7 to remove polyubiquitin chains from substrates.
J. Biol. Chem., 294, 4177-4187 (2019)

2018
Original article
1.    Suzuki T, Katayama Y, Komatsu Y and Kamiya H.
Analysis of large deletion mutations induced by abasic site analog in human cells.
Genes Environment, 40, 24 (8 pages) (2018)

2.    Kamiya H, Makino T, Suzuki T, Kobayashi M and Matsuoka I.
Mutaions induced by 8-oxo-7,8-dihydroguanine in WRN- and DNA polymerase λ-double knockdown cells.
Mutagenesis, 33, 301-310 (2018)


3.   
Suzuki T, Goda T and Kamiya H.
Durable transgene expression driven by CpG-free and -containing promoters in plasmid DNA with CpG-free backbone.
Biol. Pharm. Bull., 41, 1489-1493 (2018)

4.    Suzuki T, Kuramoto Y and Kamiya H.
Reduction of Werner syndrome protein enhances G:C → A:T transition by O6-methylguanine in human cells.
Chem. Res. Toxicol., 31, 319-324 (2018)


5.    Suzuki T, Yanai Y, Nishigaki N, Nakatsu Y, Tsuzuki T and Kamiya H.
Effects of mismatches distant from the target position on gene correction with a 5'-tailed duplex.
J. Biosci. Bioeng., 125, 619-623 (2018)

6.    Suzuki T, Matsumoto K, Honma M and Nohmi T.
Impact of DNA polymerase ζ mutations on genotoxic thresholds of oxidative mutagens.
Mutat. Res./Gen. Tox. En., 828, 10-14 (2018)

7.    Shimura T, Sasatani M, Kawai H, Kamiya K, Kobayashi J, Komatsu K and Kunugita N.
Radiation-Induced Myofibroblasts Promote Tumor Growth via Mitochondrial ROS-Activated TGFβ Signaling.
Mol. Cancer Res., 16, 1676-1686 (2018)

8.    Okamoto Y, Iwasaki WM, Kugou K, Takahashi KK, Oda A, Sato K, Kobayashi W, Kawai H, Sakasai R, Takaori-Kondo A, Yamamoto T, Kanemaki MT, Taoka M, Isobe T, Kurumizaka H, Innan H, Ohta K, Ishiai M and Takata M.
Replication stress induces accumulation of FANCD2 at central region of large fragile genes.
Nucleic Acids Res., 46, 2932-2944 (2018)


2017
Review article

1.    Suzuki T and Kamiya H.
Mutations induced by 8-hydroxygunanine (8-oxo-7,8-dihydroguanine), a representative oxidized base, in mammalian cells.
Genes Environment, 39, 2 (6 pages) (2017)

Original article

1.    Suzuki T, Imada T, Komatsu Y and Kamiya H.
Comparison of DNA fragments as donor DNAs upon sequence convesion of cleaved target DNA.
Nucleosides Nucleotides Nucleic Acids, 36, 428-434 (2017)


2.    Nishihara M, Kanda GN, Suzuki T, Yamakado S, Harashima H and Kamiya H.
Enhanced transgene expression by plasmid-specific recruitment of histone acetyltransferase.
J. Biosci. Bioeng., 123, 277-280 (2017)

3.   
Kanemaru Y, Suzuki T, Sassa A, Matsumoto K, Adachi N, Honma M, Numazawa S and Nohmi T.
DNA polymerase κ protects human cells against MMC-induced genotoxicity through error-free translesion DNA synthesis.
Genes Environment, 39, 6 (10 pages) (2017)

4.   
Shimura T, Sasatani M, Kawai H, Kamiya K, Kobayashi J, Komatsu K and Kunugita N.
ATM-mediated mitochondrial damage response triggered by nuclear DNA damage in normal human lung fibroblasts.
Cerll Cycle, 16, 2345-2354 (2017)


2016
Original article
1.    Suzuki T, Yasui M and Honma M.
Mutator phenotype and DNA double-strand break repair in BLM helicase-deficient human cells.
Mol. Cell. Biol., 36, 2877-2889 (2016)


2.    Suzuki T, Grúz P, Honma M, Adachi N and Nohmi T.
The role of DNA polymerase ζ in translesion synthesis across bulky DNA adducts and cross-links human cells.
Mutat. Res., 791-792, 35-41 (2016)


3.    Suzuki T, Grúz P, Honma M, Adachi N and Nohmi T.
Sensitivity of human cells expressing low-fidelity or weak-catalytic-activity variants of DNA polymerase ζ to genotoxic stresses.
DNA Repair, 45, 34-43 (2016)


4.    Suzuki T, Imada T, Nishigaki N, Kobayashi M, Matsuoka I and Kamiya H.
Cleavage of target DNA promotes sequence conversion with a tailed duplex.
Biol. Pharm. Bull., 39, 1392-1395 (2016)


5.    Kamiya H, Ito M, Nishi K and Harashima H.
In vivo selection of active deoxyribonucleoside kinase by a mutagenic nuceloside analog.
J. Biotechnol., 228, 52-57 (2016)


6.    Suzuki T, Miura N, Hojo R, Yanagiba Y, Suda M, Hasegawa T, Miyagawa M and Wang RS.
Genotoxicity assessment of intravenously injected titanium dioxide nanoparticles in gpt delta transgenic mice.
Mutat. Res., 802, 30-37 (2016)

7.    Kamiya H, Nishigaki N, Ikeda A, Yukawa S, Morita Y, Nakatsu Y, Tsuzuki T and Harashima H.
Insertion and deletion mismatches distant from the target position improve gene correction with a tailed duplex.
Nucleosides Nucleotides Nucleic Acids, 35, 379-388 (2016)


2015
Original article

1.    Kamiya H, Kurokawa M, Makino T, Kobayashi M and Matsuoka I.
Induction of action-at-a-distance mutagenesis by 8-oxo-7,8-dihydroguanine in DNA pol λ-knockdown cells.
Genes Environment, 37, 10 (8 pages) (2015)


2.    Kanemaru Y, Suzuki T, Niimi N, Gruz P, Matsumoto K, Adachi N, Honma M and Nohmi T.
Catalytic and non-catalytic roles of DNA polymerase κ in protection of human cells against genotoxic stresses.
Environ. Mol. Mutagen., 56, 650-662 (2015)


3.   
Yanagiba Y, Suzuki T, Suda M, Hojo R, Gonzalez FJ, Nakajima T and Wang RS.
Cytochrome P450 2E1 is responsible for the initiation of 1,2-dichloropropane-induced liver damage.
Toxicol. Ind. Health, 0748233714568801 (Online First) (2015)


4.    Kamiya H, Yamazaki D, Nakamura E, Makino T, Kobayashi M, Matsuoka I and Harashima H.
Action-at-a-Distance Mutagenesis Induced by Oxidized Guanine in Werner Syndrome Protein-Reduced Human Cells.
Chem. Res. Toxicol., 28, 621-628 (2015)


5.   
Maruyama H, Furukawa K, Kamiya H, Minakawa N and Matsuda A.
Transcription of 4'-thioDNA templates to natural RNA in vitro and in mammalian cells.
Chem. Commun., 51, 7887-7890 (2015)


2014
Original article

1.    Kanda GN, Miyamoto S, Kobayashi M, Matsuoka I, Harashima H and Kamiya H.
Anatomy of plasmid DNAs with anti-silencing elements.
Int. J. Pharm., 464, 27-33 (2014)

2.    Kamiya H, Suzuki T and Harashima H.
Suppression of Short Tract Gene Conversion in Episomal DNA by p53 Reduction.
Genes Environment, 35, 65-68 (2014)


3.    Suzuki T, Yanagiba Y, Suda M, Wang RS.
Assessment of the Genotoxicity of 1,2-Dichloropropane and Dichloromethane after Individual and Co-exposure by Inhalation in Mice.
J. Occup. Health, 56, 205-214 (2014)

4.    Miura N, Ohtani K, Hasegawa T, Hojo R, Yanagiba Y, Suzuki T, Suda M, Wang RS.
Hazardous effects of titanium dioxide nanoparticles on testicular function in mice.
Fund. Toxicol. Sci., 1, 81-85 (2014)

5.    Sassa A, Suzuki T, Kanemaru Y, Niimi N, Fujimoto H, Katafuchi A, Gruz P, Yasui M, Gupta RC, Johnson F, Ohta T, Honma M, Adachi N and Nohmi T.
In vivo evidence that phenylalanine 171 acts as a molecular brake for translesion DNA synthesis across benzo[a]pyrene DNA adducts by human DNA polymerase kappa.
DNA Repair, 15, 21-28 (2014)

6.    Yasui M, Kanemaru Y, Kamoshita N, Suzuki T, Arakawa T and Honma M.
Tracing the fates of site-specifically introduced DNA adducts in the human genome.
DNA Repair, 15, 11-20 (2014)


2013
Original article

1.    Iida S, Kamiya H, Nakaya A, Hayashi Y, Sawada A, Kaji N, Baba Y and Harashima H.
Reduced plasma glucose by asparagine synthetase knockdown in the mouse liver.

Biol. Pharm. Bull., 36, 2009-2011 (2013)

2.    Kamiya H and Kurokawa M.
DNA polymerase λ promotes mutagenesis induced by 8-oxo-7,8-dihydroguanine (8-hydroxyguanine) paired with adenine.
Genes Environment, 35, 105-109 (2013)

3.    Togashi R, Harashima H and Kamiya H.
Correlation between transgen expression and plasmid DNA loss in mouse liver.

J. Gene. Med., 15, 242-248 (2013)

4.    Kamiya H, Miyamoto S, Goto H, Kanda GN, Kobayashi M, Matsuoka I and Harashima H.
Enhanced transgene expression from chromatinized plasmid DNA in mouse liver.
Int. J. Pharm., 441, 146-150 (2013)

5.    Suzuki T, Ukai A, Honma M, Adachi N and Nohmi T.
Restoration of mismatch repair functions in human cell line nalm-6, which has high efficiency for gene targeting.
PLoS ONE, 8, e61189 (2013)

6.    Horibata K, Ukai A, Kimoto T, Suzuki T, Kamoshita N, Masumura K, Nohmi T and Honma M.
Evaluation of in vivo genotoxicity induced by N-ethyl-N-nitrosourea, benzo[a]pyrene, and 4-nitroquinoline-1-oxide in the Pig-a and gpt assays.
Environ. Mol. Mutagen., 54, 747-754 (2013)


2012
Original article

1.    Kanda GN, Togashi R, Harashima H and Kamiya H.
Effects of endogenous proteins and microRNA target sequence in a positive feedback system.
Biol. Pharm. Bull., 35, 1534-1538 (2012)

2.    Kamiya H and Kurokawa M.
Mutagenic bypass of 8-oxo-7,8-dihydroguanine (8-hydroxyguanine) by DNA polymerase κ in human cells.
Chem. Res. Toxicol., 25, 1771-1776 (2012)

3.   
Fukunaga S, Kanda G, Tanase J, Harashima H, Ohyama T and Kamiya H.
A designed curved DNA sequence remarkably enhances transgene expression from plasmid DNA in mouse liver.
Gene Ther., 19, 828-835 (2012)

4.    Takagi Y, Setoyama D, Ito R, Kamiya H, Yamagata Y, Sekiguchi M.
Human MTH3 (NUDT18) protein hydrolyzes oxidized forms of guanosine and deoxyguanosine diphosphates: comparison with MTH1 and MTH2.

J. Biol. Chem., 287, 21541-21549 (2012)

5.    Kawasaki K, Kanaba T, Yoneyama M, Murata-Kamiya N, Kojima C, Ito Y, Kamiya H and Mishima M.
Insights into substrate recognition by the Escherichia coli Orf135 protein through its solution structure.
Biochem. Biophys. Res. Commun., 420, 263-268 (2012)

6.    Kawasaki K, Yoneyama M, Murata-Kamiya N, Harashima H, Kojima C, Ito Y, Kamiya H and Mishima M.
1H, 13C and 15N NMR assignments of the Escherichia coli Orf135 protein.
Biomol. NMR Assign., 6, 1-4 (2012)


7.    Kanda G, Ochiai H, Harashima H and Kamiya H.
CREB-binding protein transcription activation domain for enhanced transgene expression by a positive feedback system.
J. Biotechnol., 157, 7-11 (2012)


2011
Original article

1.    Ochiai H, Harashima H and Kamiya H.
Effects of insulator cHS4 on transgene expression from plasmid DNA in a positive feedback system.
J. Biosci. Bioeng., 112, 432-434 (2011)

2.    Arimori T, Tamaoki H, Nakamura T, Kamiya H, Ikemizu S, Takagi Y, Ishibashi T, Harashima H Sekiguchi M and Yamagata Y.
Diverse substrate recognition and hydrolysis mechanisms of human NUDT5.
Nucleic Acids Res., 39, 8972-8983 (2011)

3.    Morita Y, Tsuchiya H, Harashima H and Kamiya H.
Correction of frameshift mutations with tailed duplex DNAs.
Biol. Pharm. Bull., 34, 1465-1468 (2011)

4.    Hori M, Suzuki T, Minakawa N, Matsuda A, Harashima H and Kamiya H.
Mutagenicity of secondary oxidation products of 8-oxo-7,8-dihydro-2'-deoxyguanosine 5'-triphosphate (8-hydroxy-2'- deoxyguanosine 5'-triphosphate).
Mutat. Res., 714, 11-16 (2011)


5.    Suzuki T, Harashima H and Kamiya H.
Unexpectedly weak impacts of decreased p53 and retinoblastoma protein levels on mutagenesis by 8-oxo-7,8-dihydroguanine (8-hydroxyguanine).
Genes Environment, 33, 103-108 (2011)

 

バナースペース

Department of Nucleic Acids Biochemistry, Hiroshima Univ.

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